Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs3851102 chr11:123524411 C/T 3.34E-5 503 31.92 29.37 24.67 KM Plot
THCA rs3859320 chr18:77499188 C/G 2.18E-14 496 31.67 31.47 13.15 KM Plot
THCA rs3887312 chr11:123527286 G/A 2.84E-5 498 31.87 28.33 26.73 KM Plot
THCA rs3934721 chr20:47243164 C/T 0 503 31.45 33.5 6.78 KM Plot
THCA rs3934722 chr20:47243209 C/T 0 503 31.47 33.1 6.78 KM Plot
THCA rs3936192 chr20:47246077 C/G 0 503 31.47 32.93 7.77 KM Plot
THCA rs3936193 chr20:47246127 G/A 0 503 31.47 32.93 7.77 KM Plot
THCA rs3968927 chr3:69183404 C/T 6.52E-7 488 31.98 30.07 14.8 KM Plot
THCA rs3983739 chr12:13269946 A/G 7.5E-6 487 31.33 31.7 32.8 KM Plot
THCA rs3991789 chr19:33413002 G/A 2.99E-5 502 31.42 34.43 32.93 KM Plot
THCA rs4073097 chr20:47243866 C/T 0 495 31.47 32.03 6.78 KM Plot
THCA rs4073098 chr20:47243746 C/T 0 496 31.47 33.27 7.77 KM Plot
THCA rs4076252 chr20:47245290 G/A 0 502 31.47 32.93 7.77 KM Plot
THCA rs4076292 chr20:47245761 A/G 0 503 7.77 32.92 31.47 KM Plot
THCA rs41309040 chr9:123781763 C/G 2.7E-5 503 31.7 31.47 21.97 KM Plot